rs32742610 SNP Detail

Summary

• ID
  rs32742610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164269487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGAGGCAG TCACTGGTGC GTGACCCCAA AGCCAACCTG
  CTCACCAGCT GTGCTTCATG AACAGCAGCG ACTGAGGCTT GGCTGGTCTT TCTCTTCTTC
  Y
  AAGGCAGTGA TTCTTAGCTT TCCTAATGTG CTGTGACCCT ATCACATAGT TCCTCATGTT
  GTGGTGACCC CCAACCATAG CATTATTTTC ACTGCTACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45187973	mCV24721473	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss145978709	ENSMUSSNP6835126	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32742610					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164269487 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13722	regulatory region 13722	1714 bp proximal
Rr25449	regulatory region 25449	1649 bp proximal
Rr31656	regulatory region 31656	within coordinates
Tssr9785	transcription start site region 9785	1308 bp upstream
Tssr9786	transcription start site region 9786	1346 bp upstream
Tssr14743	transcription start site region 14743	342 bp upstream
Tssr14744	transcription start site region 14744	300 bp upstream