rs32743238 SNP Detail

Summary

• ID
  rs32743238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188117690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGCTCCTC CTTCTGCTGC TCCTCTTCCT CCTGCTGTTG
  CTCCTCCTGC TGCTGGATTG TTCCTCCTGT TGCTGGTTGG AGATATCCAG ACAATGAAGA
  Y
  TTAAATTATC ACAGGAAAGT TGACACCCCT AATCAGCATG AAGCAGCCTA ATGATATTGA
  CACCCCCGGT TACAATAACA TCTTACATTT TATGCCATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45188428	mCV22305166	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146473670	ENSMUSSNP216206	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320187877	CHEV_1_190209372	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32743238					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188117690 () rs orientation: forward

Symbol	Name	Function Class
Rr425688	regulatory region 425688	within coordinates
Rr425689	regulatory region 425689	627 bp distal
Rr425690	regulatory region 425690	384 bp distal
Rr425691	regulatory region 425691	225 bp distal
Rr425692	regulatory region 425692	135 bp distal
Rr425693	regulatory region 425693	43 bp distal
Rr425694	regulatory region 425694	286 bp proximal
Rr425695	regulatory region 425695	1878 bp proximal
Ush2a	usherin	Intron