rs32743539 SNP Detail

Summary

• ID
  rs32743539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154495290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCAAGACT CAGAGACAGG AAGAGCCTGT GAGGATCAGG
  AAATGTGAAA AGTAGGCTGT GGAAAGAAAT GTTTGCTTGT CTACTCTACA TGGTGTTTTT
  W
  AAAAAATATT TAATAATATC AGAGGCTATG GTGTTATTAT GAGTCAGGAT GTGTAAAAAG
  CAATATCCAT ATTATCTCAC TTAATCATCA CACAACTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45188038	mCV23100340	ABI	CRAMUS_MOUSE	f	SNP	A	A	A						T
ss49515682	NES12865451	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	T	A	A	A	A	A	A
ss145765814	ENSMUSSNP645546	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32743539					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49515682	NES12865451	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154495290 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	1719 bp downstream
Rr420845	regulatory region 420845	1512 bp distal
Rr420846	regulatory region 420846	541 bp distal