rs32743586 SNP Detail

Summary

• ID
  rs32743586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154934781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTCAGG GCTGTGGTCA
  CCTTAGCCTA GCTGCCTTAT CCAAGGGCTG AAAAGATAGA GTAAGTGACT CTTTATTTCC
  ATTATAATTT CTTTCTTCCT GGAACTGTCT CTCTCACCTG GAAACTGGAA TTAACCCAGT
  TCTAAAATTT AGATTCACAT GGTGCTTGTC TCTGCGAAAT GATTAAAGGG TTCAGAGACT
  R
  TGAATGGGGG AGCCAGGAGT CCTTGGTATC CAGACAGCTC TCTTCTCAGG GGAAGGATGA
  ATGGGTCTCT GCTTTCTCCC AGGCAGAGTT TGCCAGGCCT TGTGAGCCAG AGTGTCTCCT
  CCCCTGGCCT CCTGGCTAGG CTCTAATTCT GCCTCCGTTG TCAGGGCAGG TCTGGGAAGG
  ATGAGGGAAT TGTCCTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45188535	mCV24610426	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32743586					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154934781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	627 bp proximal
Gm29282	predicted gene 29282	1856 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	within coordinates
Rr372279	regulatory region 372279	1738 bp downstream
Rr396410	regulatory region 396410	523 bp upstream
Tssr248	transcription start site region 248	488 bp downstream
Tssr9521	transcription start site region 9521	651 bp upstream
Tssr9522	transcription start site region 9522	909 bp upstream
Tssr14331	transcription start site region 14331	499 bp downstream
Tssr14332	transcription start site region 14332	513 bp downstream
Tssr14333	transcription start site region 14333	523 bp downstream