rs32743861 SNP Detail

Summary

• ID
  rs32743861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180867174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACTGTA TCCTTGAAAC
  CTTCTCTGTA CAGAGTTATT GCGCTGATTC TTTGCAGAAG TATTTCTTCG AGGTTGTGGT
  GGCTGTGCGC AAGCCTAGGG CCAGTCTTTT AAGATAGCTA CTGTCAAGCG ATCACACAGA
  AAGATCTTCC ACATGAATTG TGGGATTTTT GTGTTTTCTG GTGCAGCTGA GACAGGAAGC
  R
  TGGTTTTTAT TCTGCCTTTG TTGAAAGTTT TTCTGACAGG GAGGTCCATC ATGCAGGATA
  TTCTTCTACT CATTTGTGTA AGAATACCTG AGACCTCACC TTTCCAGATT AACCATGAGA
  CAGCCAACAC AGGAGCTAAA CAGTGTTTGC CTAGGAGTGC CCTCTAGTGG CTACAAGAAA
  TACATGGGAC ACAAGAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46723153	NES10691553	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32743861					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46723153	NES10691553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180867174 () rs orientation: forward

Symbol	Name	Function Class
Rr424676	regulatory region 424676	1644 bp distal
Rr424677	regulatory region 424677	within coordinates
Rr424678	regulatory region 424678	154 bp proximal
Rr424679	regulatory region 424679	434 bp proximal