rs32744005 SNP Detail

Summary

• ID
  rs32744005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191712258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGACAGC CACAGATAGA CTGGCCTTCT GATGTATAAA
  GGTTTTGTCC ATGCTTATCT GGATTTACAG GAACTTGAAA GAAGTGCCCT CATTACAGTT
  R
  AGGAAACGGA TATTCCAGTG ATCTGGCCGT AGGCTAGATG TATCAGGTAC AGCTGTCATT
  CTCTCTCCAG CCTCAGCATG CCTCATCTGA GACAACTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45188121	mCV25303783	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss60361395	NES15865043	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	G		G	A	A	G		A
ss146512967	ENSMUSSNP3029082	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320196702	CHEV_1_193804178	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32744005					SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361395	NES15865043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191712258 () rs orientation: forward

Symbol	Name	Function Class
Rd3	retinal degeneration 3	Intron
Rr426278	regulatory region 426278	776 bp distal
Rr426279	regulatory region 426279	1005 bp proximal