rs32745182 SNP Detail

Summary

• ID
  rs32745182
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84443003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCAGGTG CTCTAGGAGG CCGGAAGTAC TGACCCTGGA
  GTTAGAAGGA TGTAAACTGA GAAACCTAAC TCAGGTCGTG TGAAAGCATC ATTAATTCTT
  M
  AGCCACATTG GCCACCTTGC CTAGCCAGTC TTAGAACTTA AAAGTTTTTT GGTTGTTGTT
  GAAACAAGAT CTCACTGTGT AGCCCAGGCT AGCCTGGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46186505	mCV23003958	ABI	CRAMUS_MOUSE	f	SNP		C					A		C
ss51971793	NES14985341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		A	C		C	C	C		C
ss145360668	ENSMUSSNP1499780	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss322745604	CHEV_8_86240273	CHEVERUD	SCREENING_POP	f	SNP												C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32745182					SNP	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971793	NES14985341	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84443003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			426 bp distal
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr401010	regulatory region 401010			1099 bp downstream
Rr666291	regulatory region 666291			1826 bp distal
Rr666292	regulatory region 666292			816 bp distal
Rr666293	regulatory region 666293			51 bp distal
Rr666294	regulatory region 666294			214 bp proximal
Tssr78284	transcription start site region 78284			1170 bp downstream
Tssr78285	transcription start site region 78285			1136 bp downstream
Tssr78286	transcription start site region 78286			1086 bp downstream
Tssr78287	transcription start site region 78287			1062 bp downstream
Tssr78288	transcription start site region 78288			850 bp downstream