rs32748228 SNP Detail

Summary

• ID
  rs32748228
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50673855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACTAACC TCGTGGGTCT ACTTTATGCT TAGAATTCTG
  TGCTGTTAGG GAAGCTGTTT CCTTCATAGT CCTCTCATCA GGGGTCATTC AGTAAGAACA
  W
  AACAATGCTC TTTGACTCCA GGAATGCAAA GTGTAAGCTA TGCTGGGCTT TTCAGATTTG
  CCACTGATAG AAAGCGGAGA GGAGTGTTTG ACTAGGAGAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47708428	NES11320986	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32748228					SNP	A	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47708428	NES11320986	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50673855 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	mRNA-UTR
Gm67659	predicted gene, 67659	335 bp upstream
Rr678731	regulatory region 678731	884 bp proximal
Rr678732	regulatory region 678732	973 bp proximal