rs32748504 SNP Detail

Summary

• ID
  rs32748504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84442037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGCTCGC GGAGGCGAAC CGGGCGGCAG GTAAGTGGCG
  GGTCCCGAGG CCGGGGCCGC GGTGCGGGGC TGTGGGTTCG CCGAAAGGGA AGCTGCGGGG
  Y
  GCGGTGCAGC GGGAGGAGTG GGCGCACAGC AGCGGGACGG TTAGGCACCT CGAGCCGGCG
  GCCGTTGGGC TCCATTGAGC ATGCGCCAGG GGCGGGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46187096	mCV23003776	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145360643	ENSMUSSNP374106	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322745599	CHEV_8_86239307	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32748504					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84442037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20654	CpG island 20654			within coordinates
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr382392	regulatory region 382392			1301 bp downstream
Rr401010	regulatory region 401010			133 bp downstream
Rr666291	regulatory region 666291			860 bp distal
Rr666292	regulatory region 666292			within coordinates
Rr666293	regulatory region 666293			151 bp proximal
Rr666294	regulatory region 666294			1180 bp proximal
Tssr78284	transcription start site region 78284			204 bp downstream
Tssr78285	transcription start site region 78285			170 bp downstream
Tssr78286	transcription start site region 78286			120 bp downstream
Tssr78287	transcription start site region 78287			96 bp downstream
Tssr78288	transcription start site region 78288			96 bp upstream