rs32749029 SNP Detail

Summary

• ID
  rs32749029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134253698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAACTCA CAGCCCAACT
  GTGCCTCTGA AGACCAGGGC CATATCTGCT TTGGCCGCTG AGTCTACTGG TGTCTGGCCT
  GCACGCTGCT CAGGAATTAT TACTGCAGTT ACCTCTCCGT TAGGTAAATT TATATACATC
  TTTACTTCAT TCTAAAGCTG CAGCCTTCAA GCAACCAGGG ATGCTCTCCA GGGCTAGAAT
  R
  CTTCAGTTGG GTAAAGAAAG ATATGCTCAG ACTAAAACTC TCCCTGCTCC TGCCTTGATG
  GTACAGTCCC CCGAATCCCA CAGCCTCAAA CAAAAAGAAG TATCAGCTGG AATGGCCCAG
  ATGATAATAA AAGTATCCTG TGTCCCTGTA GAGGCTTCTC CTTAAAGGAC TCTGCCTTAA
  GCCTGGAGTG GTGGCGCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45189003	mCV22357582	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145505232	ENSMUSSNP2044189	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32749029					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134253698 () rs orientation: forward

Symbol	Name	Function Class
Ppfia4	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	within coordinates
Rr12474	regulatory region 12474	898 bp distal
Rr24642	regulatory region 24642	455 bp distal
Rr24643	regulatory region 24643	816 bp proximal
Rr24644	regulatory region 24644	1943 bp proximal
Tssr8873	transcription start site region 8873	409 bp downstream
Tssr13789	transcription start site region 13789	987 bp downstream
Tssr13790	transcription start site region 13790	1004 bp downstream