rs32749039 SNP Detail

Summary

• ID
  rs32749039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACGT GGTGGGACTG AGATTCAAAG
  M
  CAGTGAATAC TATTCTAGAG CCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46186459	mCV24193290	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	C
ss145392095	ENSMUSSNP1580453	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322751350	CHEV_8_87212932	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32749039					SNP	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	997 bp distal
Cpgi20706	CpG island 20706	448 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1134 bp upstream
Rr666573	regulatory region 666573	1142 bp distal
Rr666574	regulatory region 666574	1770 bp distal
Rr666575	regulatory region 666575	798 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	189 bp proximal
Rr666578	regulatory region 666578	759 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	236 bp upstream
Tssr78431	transcription start site region 78431	275 bp upstream
Tssr82111	transcription start site region 82111	1934 bp upstream
Tssr82112	transcription start site region 82112	1462 bp upstream
Tssr82113	transcription start site region 82113	1414 bp upstream
Tssr82114	transcription start site region 82114	1149 bp upstream
Tssr82115	transcription start site region 82115	1123 bp upstream