rs32752879 SNP Detail

Summary

• ID
  rs32752879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16888356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGTCCAAAA CAAAGGGCAG GCGGCCCGCG AGGCGGCGGC AGGAGGATGC CTCGCGCCCG
  GAGTGGGCGC CAACGGCCGG AGCGCGTCCC GGGTCACACC GGGACCGCCT GAAAACCGAG
  CTCGCGCCGA CCGAGCCTGG GCCGGATGGG CGCAGCGGAC CGCGGAGCGG CCGTGAGTAC
  GGGCGGGCCT CAGGGGTTCT CTGCGGAGAC CTGAGGATCT CCGGCTCCGG GAGGCGGGGA
  AGCACCTGTT GGGCGCGGGC GGGCCGGGCG GGAGTGCGGA GGATGCGTTG ACTTTTTGTT
  Y
  TGATGTTCCG AACTGTTGGT ATTTGGGTCA TTAGAAGACA ACGCAAAATC CCGGTCTTTC
  TTTCTTTCTT TTTTCTTCGC CCCCCCCCCC CCATTGTTTT TTCCCCTACC TTAAAAAATG
  GGGAAAGAAA TAAATACAGA AGATACCTCC AATAAAAGAA TATTATGGGG TGGCATTTTC
  AAGTTGCCTG TACAATAATA ACTAAAGGGA ATTGTCCTCA TTGTTTACCA CTTGTGGCTC
  TAGGCTTTAT CAATGTAAAT TGCTAACAGT AGCAACTAAA TAAGATATTC TCTACTCAAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39446204	mCV27574976	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32752879					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16888356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	within coordinates
Gm59807	predicted gene, 59807	452 bp upstream
Rr316811	regulatory region 316811	956 bp distal
Rr324980	regulatory region 324980	within coordinates
Tssr137265	transcription start site region 137265	277 bp downstream
Tssr137266	transcription start site region 137266	253 bp downstream
Tssr137267	transcription start site region 137267	238 bp downstream
Tssr137268	transcription start site region 137268	217 bp downstream
Tssr137269	transcription start site region 137269	172 bp downstream
Tssr137270	transcription start site region 137270	156 bp downstream
Tssr137271	transcription start site region 137271	147 bp downstream
Ypel1	yippee like 1	within coordinates