rs32753893 SNP Detail

Summary

• ID
  rs32753893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189077299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTCTTG ACTCCTAGTC
  TCAAAAGTAA CTTAAGTCAT TTAAAAATAT ATGAGTCTGA TCTCACTCCC AGACTTAGAC
  CCTCCCAGAG CTTCTAGGTC ATAGGTCATG CTGTTGCTTC ATCTCATTGG CTCATTTCAC
  TGCAGGCCTG TCTGGGCCCA ACAGCCAGAT TCTCCCAACA CACACACATG CACACGCACA
  Y
  GCACACACAC ACACACACCT ACTTTATAGG ACTAAAGGAT TACTTCAGTA GAATTCTGTG
  TACAGAATCT TCCTGTGTGC AAAAGTACTT GCCCAGGGGA TTGATTTTAG GGGTTTGGCT
  CATACAACTC CTAAATCTTG CAAATCCCTC TGGAATCCCA GAGCAGTTAC AGCCCACTGG
  AAGCTTGAGG TACAATTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45188971	mCV24983974	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss146485641	ENSMUSSNP1013871	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs32753893					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189077299 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			210 bp downstream
Cpgi1195	CpG island 1195			677 bp distal
Kcnk2	potassium channel, subfamily K, member 2			Intron
				Noncoding-Transcript-Variant
Rr425780	regulatory region 425780			1958 bp distal
Rr425781	regulatory region 425781			1802 bp distal
Rr425782	regulatory region 425782			1661 bp distal
Rr425783	regulatory region 425783			1406 bp distal
Rr425784	regulatory region 425784			1108 bp distal
Rr425785	regulatory region 425785			1126 bp distal
Rr425786	regulatory region 425786			921 bp distal
Rr425787	regulatory region 425787			573 bp distal
Tssr15712	transcription start site region 15712			1744 bp upstream
Tssr15713	transcription start site region 15713			1353 bp upstream