rs32754176 SNP Detail

Summary

• ID
  rs32754176
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50619895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAATGA GCTGAGCCCA
  GCATTCACTG TTCTCCCCTC TGGATGTGGC CGCAACCTGA CCCAGCTGCC TCAAAGGCCC
  TCACCACTCC TCCCCCTCAC GCAGGACTTC TCTTCACTCT GTGAGCCAGA GTAAACCCTT
  CTGTCTTTTA GCTGCTTCTG TCATGGAAAC GATGCAAGTT TACATCAACA CAGCATCTAT
  K
  AAAGAAGTGC AGGTAGAAGA GCTTTTGATC TTAATCCTTT TGTGCCTACA TTTCCTGCCA
  GTCCTCAGGT AAATCCTCTC TAAGTAAAGG AAAGAGGGCA GATGCTTAAG ATGGACTTTG
  GGATTCTTTT TTTTTTTTAC TTTATTTTCA GTTATGTGCG TGTGAGTGTG TGAGTGTGAG
  TGTGTGTGTG AGTGTGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47707816	NES11324240	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	T	G	T	T	T	T
ss136479808	ENSMUSSNP7059967	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32754176					SNP	G	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47707816	NES11324240	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50619895 () rs orientation: forward

Symbol	Name	Function Class
Dixdc1	DIX domain containing 1	within coordinates
Gm39337	predicted gene, 39337	within coordinates
Gm51674	predicted gene, 51674	1925 bp downstream
Rr678713	regulatory region 678713	676 bp proximal
Rr678714	regulatory region 678714	699 bp proximal