rs32756339 SNP Detail

Summary

• ID
  rs32756339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAAGAC AGAGTGCTAA
  TTACTATGGT GCCAGAAACC ATCTAAGCTA CTCCTTTGTG AGGTCTGGTA TTTAAAGGTA
  AAACCAAGAG AGCACACACA GGAACCATAA CTCTAGAAAC ATATCAAAAG ACACTTACTT
  GCAGTAGCTC TCATTGACCA CAACAGATAC CACCCCCAAG GAAGCAGAAA GGTTAACTGA
  Y
  GATTTCGCAT AGAGAAAAAA AAAAATTCAA GTGTTATTCT TTATTTCTAT ATTTCTCAAG
  GGAATGCCAC ATCAAATATT TAGTTGACAC TTTTAATTGC TCAATATTTT AATACAAATA
  TAGGAAATTA TACAGAATTA AATAACACGT GAAAAGCATA CCAAGTATAT AAATATCCAG
  TTCAACAATG GAAACAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss48208093	NES12149117	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	C	C	T		C	T	C
ss148077455	ENSMUSSNP2755408	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
ss325166160	CHEV_16_45382214	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs32756339					SNP	T	T	C	T	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208093	NES12149117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202464 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	34 bp downstream
Tssr4884	transcription start site region 4884	589 bp downstream
Tssr4885	transcription start site region 4885	626 bp downstream
Tssr4886	transcription start site region 4886	958 bp downstream
Tssr141220	transcription start site region 141220	498 bp downstream
Tssr141221	transcription start site region 141221	521 bp downstream
Tssr141222	transcription start site region 141222	642 bp downstream
Tssr141223	transcription start site region 141223	655 bp downstream
Tssr141224	transcription start site region 141224	674 bp downstream
Tssr141225	transcription start site region 141225	698 bp downstream
Tssr141226	transcription start site region 141226	750 bp downstream
Tssr141227	transcription start site region 141227	804 bp downstream
Tssr141228	transcription start site region 141228	846 bp downstream
Tssr141229	transcription start site region 141229	862 bp downstream
Tssr141230	transcription start site region 141230	1015 bp downstream
Tssr141231	transcription start site region 141231	1109 bp downstream
Tssr141232	transcription start site region 141232	1161 bp downstream