rs32756783 SNP Detail

Summary

• ID
  rs32756783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36348158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acagaggca gaatggccta gaattatata
  ccccaccccg tcttctatta cagagaaact gaggcataga gaCAGACTAA GGTCTGACAG
  TGAGGGAGGA CCAGGCTTCA AAAACTCCTT GCTCTTTCTC TTCTTTCCTA GTGGCCTTCC
  R
  CTGCCCTCGG TGGGAAGCTG ATCTGTAATG ATCTAGATTG CCTCTTGGAC GAGTGTAGCA
  GGCACCGTGC TAGGGTGAGG AGAGGAGGAG AAAGGAAAAG TGAGGTCCGG AAGTTCCCTG
  TGTAGGGGTT TTGGCCTTCT GTTGAGTCAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45190010	mCV27594716	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	G
ss51238013	NES14282183	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G		G	G	A	G		A
ss148924910	ENSMUSSNP5491845	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss319688338	CHEV_1_36365922	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32756783					SNP	G	G	A	G	G	G	A	G	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238013	NES14282183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36348158 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	508 bp distal
Gm70585	predicted gene, 70585	1453 bp upstream
Rr366864	regulatory region 366864	911 bp downstream
Rr395991	regulatory region 395991	1244 bp downstream
Rr409283	regulatory region 409283	1464 bp distal
Rr409284	regulatory region 409284	1298 bp distal
Rr409285	regulatory region 409285	within coordinates
Rr409286	regulatory region 409286	1709 bp proximal
Tssr6253	transcription start site region 6253	1342 bp downstream
Tssr6254	transcription start site region 6254	1314 bp downstream
Tssr6255	transcription start site region 6255	1298 bp downstream
Tssr6256	transcription start site region 6256	1002 bp downstream
Tssr6257	transcription start site region 6257	928 bp downstream
Tssr6258	transcription start site region 6258	796 bp downstream
Tssr11252	transcription start site region 11252	542 bp downstream