rs32756909 SNP Detail

Summary

• ID
  rs32756909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45218355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGCTCT GGAAAATGAG
  GAGAGTGATC AGCAGGATGA TGCTCTGGGA AGCTTGCTAT ACACAGTGGG TTCAAAAGAT
  TTTTGGTACC CAACTGTCAT CACACTCTAT TTTTAATTAG ATGTCATGAC AACGATTTCT
  TCTCTGCAAT GCAGGCCACT TATACTCTGA CAGGTGACTT AATGTATTAG CTAGCATCCA
  Y
  GTGATAACGA ATAACCAATA GCAAAGGACC AATGCTTTGT TTGAGAAAAC GGACACAATG
  AAAGAGGAGT AGAAAATGCT ACATCTAAGA ACTCACAACA AATGAACCTG GACATCATAA
  ATTAAGAAGC ATTTTAGAAT GAATATGGGT GAGTGAAGAA AAATGACATT TTAAGTGGTA
  GAAATTAGAG ATCTGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48208245	NES12148830	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	T		C	T	T	C		C
ss325166264	CHEV_16_45398105	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32756909					SNP	T	C	C	C	T	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208245	NES12148830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45218355 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	156 bp distal
Rr327058	regulatory region 327058	within coordinates
Rr327059	regulatory region 327059	1047 bp proximal
Tssr141233	transcription start site region 141233	847 bp upstream