rs32757702 SNP Detail

Summary

• ID
  rs32757702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45217090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGTTGC TACTTCCAGA
  AGTTGTAACG GGCTCTAGAG ATAATATATT GCACATTTGC TGTCCAAAAG CAGAGGTAGT
  AATGAATTCA CTGCCGCATG GAGAATGTGT CTCCTTCATC ATTGTCTTCA ATGTTCGTGA
  TGGCAAGACC CTAGAGAGAA GACAGTTCCA ACCAAACAAC TTAGTGCAGT GATGTTAGCT
  Y
  TCTAAATTCT GCAATAATAG TGACAGCAGG CACAAAAGGC TAAGAGTCTT CTAGTTCACC
  TGTTCATGTT TATGAATCAA AAATCCAAGT ACCATAACCA CATACTCAAT GCTCCTGGAA
  ATTATATTTC TGAAAGGGAA AGAGAGAGAG GGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48208219	NES12148937	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C		C	T	C		C
ss148077824	ENSMUSSNP2197133	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325166243	CHEV_16_45396840	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32757702					SNP	T	T	C	C	C	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208219	NES12148937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45217090 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	971 bp proximal
Rr327058	regulatory region 327058	912 bp proximal
Tssr141233	transcription start site region 141233	402 bp downstream