rs32758547 SNP Detail

Summary

• ID
  rs32758547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45218915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCATGT TAACACTAGT
  CCAGCAACAT TTTTTCAAGC AGAAAAACAA AAGAATAATG ATGAGGGAGC AATCCAATGT
  CATACTAACC ATGAAACCTC ATGTACTTGA CAACCTAACC CTGAGACACA CAAAGCAAAC
  ACTGTTGAAG TACAATAGCA ATTTATAAAC CCACAGTGAT AATATGAGAG TTTTATATTT
  R
  TCTGTCAGAA CCTTCAATTC CATAAGTTTA AATCATTAAG GCAAACATTT AAATATGATA
  ATATAGAAAA TTTTAAAATA AGCTTATAGG TGTCTATATT TAATTTGAAT ACACTAGATT
  TACATAGCCA TTATATGTTT ATATATATAT GGGTATATAT TATATATATG TATACTACTG
  AGTCATAAAA TGTATAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48208263	NES12148841	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	A		G	A	G		G
ss325166273	CHEV_16_45398665	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32758547					SNP	A	G	G	G	A	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208263	NES12148841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45218915 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	716 bp distal
Rr318478	regulatory region 318478	1686 bp proximal
Rr327058	regulatory region 327058	515 bp distal
Rr327059	regulatory region 327059	487 bp proximal
Tssr141233	transcription start site region 141233	1407 bp upstream