rs32759960 SNP Detail

Summary

• ID
  rs32759960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50798315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGGGGA CAGTGAGCCC
  TTAGAGTGAC CTGCATAGGT TAGTGGCAGG TCTAGGGACT AAGGATTGAG TTCAGATTTG
  TTGCTGCCTC CTGTGCTATC TGACAGGACG GAGTGGTACT ACTCACCTGT AGTGCCTGTC
  TAGCTACCCA CTGGTTTGGA CTGGGGAGCC AGCCTCTCTC TTCATTTCCT GGTACCCTTC
  Y
  GACTGCCTGC CTGCCCTTTG GCCTTCACTT TGATGAGTAA ACTTCTGGGT TTCTGTGGTG
  ACTTGTAGTT CCAGTGGGTC TCAGGTGAGG CACAGGCAAT GAGCTGGGTC CCTTGCATGG
  TGTGCTTTGC CATCCTCATA GCTCAGCTGA ACCCATCCCA TCAGCTTGGT GGGGTGTCTT
  GGGGGTCAGA ATTCTCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46301762	mCV25209766	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47709484	NES11314247	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	C		T	T	T	T
ss136483601	ENSMUSSNP2857113	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32759960					SNP	C	C	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709484	NES11314247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50798315 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	937 bp upstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	1486 bp proximal
Rr209487	regulatory region 209487	within coordinates
Tssr85077	transcription start site region 85077	1517 bp downstream