rs32760244 SNP Detail

Summary

• ID
  rs32760244
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48814215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGACCGC CACAGGTCTT
  AGCCTGCGCG AGTCGCCTGC GGCCACCAGG GACCAGGGCC GCAGAACCTG AGGCCCCTCT
  CCCGCCGCCT CCAAACCTAC GCCCCCACCC CCAGCTTCGG CGGCTCCGAG TTCCTCACCG
  TGTCTAGACT AGGGGGGAGC GGCCGTGTCT CGGGCAGAGG CTGAGGCACG CACGGAAAGC
  M
  GAGCCCGCCG CGCCCAGGCC GAGGAAGGCC CGGGGACCGA GCCCGCGCGG CACGGAGACC
  CCCGTTCGCC CCAGAAGCCC TCCACAGAAT GAGCCCGCAC GAGCTCGTCT CGCGAGATTC
  CCGCGTGTTC GCGGACCTCC AGCCGAAACC TCGCGGCCTC TCCGCCAAAG GGGGACTGCG
  GCGGGGGTGG GAGGGGATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208775	NES12148110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32760244					SNP	C	C	C	C	C	A	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208775	NES12148110	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48814215 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	333 bp upstream
Cpgi8305	CpG island 8305	within coordinates
Dzip3	DAZ interacting protein 3, zinc finger	within coordinates
Rr391755	regulatory region 391755	within coordinates
Rr516661	regulatory region 516661	within coordinates
Rr516662	regulatory region 516662	79 bp proximal
Rr516663	regulatory region 516663	347 bp proximal
Rr516664	regulatory region 516664	588 bp proximal
Tssr138707	transcription start site region 138707	345 bp upstream
Tssr141318	transcription start site region 141318	79 bp downstream
Tssr141319	transcription start site region 141319	229 bp downstream