rs32760246 SNP Detail

Summary

• ID
  rs32760246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48814611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCTCCC TGCCACCTTC
  CCGCAACCCC AGCGCCTGGA ACCCAGGCCC ACCCTGCCAA TCACCGACTG CAGTCCCACC
  CGCTGCTCCC AGACTTCCGG AGTCCGACCG GAACAGGAAG CTGCCAGGCG CAAGAGGGGT
  GGGGCTTAAA AAAAATCAAA AAATGCGCGG CGACCGCTGA AGACAGAGGG TGGCTGGTGT
  Y
  GGTGGTCGCT GACAGGCCGG CTCGTCGGCA TGGATTCCAC CGCCTGCTTG AAGTCCCTGC
  TCCTGAGCAT CAGTCAGTAC AAGGCCGTTA AGTCGGAGGC GAACGCCACT CAGCTGCTGA
  GGCACTTGGA GGTAAGGAGG TTCGGGGTGC GAGTGGGTGT CCCCTCCTTC GGTCCCCTCC
  TGTTTTCTTG TGGGGCCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208777	NES12148111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32760246					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208777	NES12148111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48814611 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	within coordinates
Cpgi8305	CpG island 8305	within coordinates
Dzip3	DAZ interacting protein 3, zinc finger	106 bp upstream
Rr391755	regulatory region 391755	within coordinates
Rr516661	regulatory region 516661	318 bp distal
Rr516662	regulatory region 516662	50 bp distal
Rr516663	regulatory region 516663	within coordinates
Rr516664	regulatory region 516664	192 bp proximal
Tssr138707	transcription start site region 138707	9 bp downstream
Tssr141318	transcription start site region 141318	299 bp upstream
Tssr141319	transcription start site region 141319	125 bp upstream