rs32760250 SNP Detail

Summary

• ID
  rs32760250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48816207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATATTC TTTTAAATGT
  TTGTCTGTGT GTGATGTATG CGCATGTGTG GGCAGGACCC TCAGAAGGCA CAAGGCTCTG
  TTCCCTGGAG CTGGTCTTGA TAGCAGCTGT GAACTCCTTG AGGTACTGCT ACTCCAACTC
  AGATTGTCTG CGGAATAGTG CATGCACCTA GCTGCTGAGC CATCCAGCCC ACATCCAGTA
  R
  TGCTTCATGT TGCTAAAACG CCTTTCAAAA AGACCTTGGC ATTACGTACT AGCAGTGCAT
  TGATTTTGCC ATCGCGCAAC CAGGCCCATC CTTAGTTCTT AGTATTTACC GTTTTTGAGG
  GTGATGTAGT TTCCGAGGAT ACACAAATAT TTATCATGAG AGACACGATT AGTCATTCGT
  CTGCACTGCT GCTGCAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208781	NES12148074	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32760250					SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208781	NES12148074	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48816207 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	within coordinates
Cpgi8305	CpG island 8305	1275 bp distal
Dzip3	DAZ interacting protein 3, zinc finger	1702 bp upstream
Rr391755	regulatory region 391755	1148 bp downstream
Rr516661	regulatory region 516661	1914 bp distal
Rr516662	regulatory region 516662	1646 bp distal
Rr516663	regulatory region 516663	561 bp distal
Rr516664	regulatory region 516664	1383 bp distal
Tssr138707	transcription start site region 138707	1605 bp downstream
Tssr141318	transcription start site region 141318	1895 bp upstream
Tssr141319	transcription start site region 141319	1721 bp upstream