rs32760252 SNP Detail

Summary

• ID
  rs32760252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48816252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGGCAG GACCCTCAGA
  AGGCACAAGG CTCTGTTCCC TGGAGCTGGT CTTGATAGCA GCTGTGAACT CCTTGAGGTA
  CTGCTACTCC AACTCAGATT GTCTGCGGAA TAGTGCATGC ACCTAGCTGC TGAGCCATCC
  AGCCCACATC CAGTAATGCT TCATGTTGCT AAAACGCCTT TCAAAAAGAC CTTGGCATTA
  Y
  GTACTAGCAG TGCATTGATT TTGCCATCGC GCAACCAGGC CCATCCTTAG TTCTTAGTAT
  TTACCGTTTT TGAGGGTGAT GTAGTTTCCG AGGATACACA AATATTTATC ATGAGAGACA
  CGATTAGTCA TTCGTCTGCA CTGCTGCTGC AGTGTGACTT TATAACCCCA CACAGTGTGA
  CTGCAGTGTG ACTTTATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208783	NES12148075	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32760252					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208783	NES12148075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48816252 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	within coordinates
Cpgi8305	CpG island 8305	1320 bp distal
Dzip3	DAZ interacting protein 3, zinc finger	1747 bp upstream
Rr391755	regulatory region 391755	1193 bp downstream
Rr516661	regulatory region 516661	1959 bp distal
Rr516662	regulatory region 516662	1691 bp distal
Rr516663	regulatory region 516663	606 bp distal
Rr516664	regulatory region 516664	1428 bp distal
Tssr138707	transcription start site region 138707	1650 bp downstream
Tssr141318	transcription start site region 141318	1940 bp upstream
Tssr141319	transcription start site region 141319	1766 bp upstream