rs32760397 SNP Detail

Summary

• ID
  rs32760397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGAGAGAG AGACCTACAT
  R
  AAAAATGAAT GAATTTCCTG TTTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48208387	NES12148701	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	A	A		G	A	G		A
ss148078242	ENSMUSSNP885785	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss325166355	CHEV_16_45407786	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32760397					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208387	NES12148701	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228036 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	871 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	1259 bp downstream
Tssr141235	transcription start site region 141235	1282 bp downstream