rs32760401 SNP Detail

Summary

• ID
  rs32760401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45228678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAAAAA AGAACCTCTC
  TCTCCGATTC TTTGTAAAAC AGAAAGCAAT TCCTTGTTTG AACATTAAGA GCATCTAGCT
  GACAGATCCA CATTCCTCTT TGTTAAGAAA GGTAACACAA GTCGGTCTTT GTCAGCCTGA
  TGAAAAGTGG TACCTGGGGT TTAATTGCGT TTAGATTCGC ATTCAATTCT ACCAATTCCG
  Y
  GTGTATAAAG AATAAGGCGT ATGACCACCC TTCCTTTTAA AATTTTCTGC CTTGTAAACA
  GTACCAAAGA CTCAAAATGT CGGCCTCTCC TCTAAATACC TTGGCATTTA ACAAGACCAC
  TAAGCTGTGG CTTGCTCGCT GCAGTACTGC TAGATGCTTC ATGGTTTCCT AGGCAAGGAG
  CAGAAATGCA GCAAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208393	NES12148704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32760401					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208393	NES12148704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45228678 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	within coordinates
Cd200	CD200 molecule	within coordinates
Cpgi8295	CpG island 8295	229 bp proximal
Rr325366	regulatory region 325366	within coordinates
Tssr141234	transcription start site region 141234	617 bp downstream
Tssr141235	transcription start site region 141235	640 bp downstream