rs32761047 SNP Detail

Summary

• ID
  rs32761047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48816342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAGATT GTCTGCGGAA
  TAGTGCATGC ACCTAGCTGC TGAGCCATCC AGCCCACATC CAGTAATGCT TCATGTTGCT
  AAAACGCCTT TCAAAAAGAC CTTGGCATTA CGTACTAGCA GTGCATTGAT TTTGCCATCG
  CGCAACCAGG CCCATCCTTA GTTCTTAGTA TTTACCGTTT TTGAGGGTGA TGTAGTTTCC
  R
  AGGATACACA AATATTTATC ATGAGAGACA CGATTAGTCA TTCGTCTGCA CTGCTGCTGC
  AGTGTGACTT TATAACCCCA CACAGTGTGA CTGCAGTGTG ACTTTATAAC CCCACACAGT
  GTGACTGCAG TGTGACTGCA GTGTGACTTT ATAACCCACA CAGAACCTGT GCTTGGAGTC
  ATTTTGCTCA TGTTGGTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48208788	NES12148078	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32761047					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208788	NES12148078	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48816342 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A			Intron
				Noncoding-Transcript-Variant
Cpgi8305	CpG island 8305			1410 bp distal
Dzip3	DAZ interacting protein 3, zinc finger			1837 bp upstream
Rr391755	regulatory region 391755			1283 bp downstream
Rr516662	regulatory region 516662			1781 bp distal
Rr516663	regulatory region 516663			696 bp distal
Rr516664	regulatory region 516664			1518 bp distal
Tssr138707	transcription start site region 138707			1740 bp downstream
Tssr141319	transcription start site region 141319			1856 bp upstream