rs32761731 SNP Detail

Summary

• ID
  rs32761731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45229956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA GAGGTCCTAA GGGCTCAGAG
  Y
  TACCTGTGAA CACACTTCCT GAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48208405	NES12148710	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	T	C	C
ss148078301	ENSMUSSNP3148247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32761731					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48208405	NES12148710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45229956 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	584 bp upstream
Cd200	CD200 molecule	540 bp upstream
Cpgi8295	CpG island 8295	630 bp distal
Gm5406	predicted gene 5406	1987 bp upstream
Rr325366	regulatory region 325366	within coordinates
Tssr138625	transcription start site region 138625	1927 bp upstream
Tssr141234	transcription start site region 141234	643 bp upstream
Tssr141235	transcription start site region 141235	545 bp upstream