rs32764989 SNP Detail

Summary

• ID
  rs32764989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181100596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCCTGC TTCTTCTCAG
  GCTTCAGGTG AGCAGTGTAG TGGCGTGGGA GAAATACTGA GAGCCACGCG GTTTGTTGGC
  ACTTCTAGGC TCCACTCGGT TTCCTTTGCT TTCTTGGATT CTAGCCATTG AGGGTTCAGG
  TGCCTTTCTG CAAGATCCAA CCCTAACCTA GAGCTCGCCC GCGGTGAGCC TCCAGGGCAC
  M
  GATGTCCGTC TCCGACAAGG GACAGAAGGG GGCGACAAAC CCGCACAGTT GGCCGGCGGA
  CCATGCCGGG CAGTGCCTGA GCCCAGAGCC ATTCTCCCCC TTTTCCCTGG TAACTGGACA
  CTTCTTGTAG ATTCCCACAG CACACAGTAG AGTGCACTCT TTGTGAAAAC ACCCCCGCCC
  CCCGCCCCCC CCCCCGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46725448	NES10651544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32764989					SNP	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46725448	NES10651544	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181100596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1134	CpG island 1134	within coordinates
Gm39717	predicted gene, 39717	within coordinates
Rr372547	regulatory region 372547	1688 bp downstream
Rr424716	regulatory region 424716	839 bp distal
Rr424717	regulatory region 424717	within coordinates
Rr424718	regulatory region 424718	18 bp proximal
Rr424719	regulatory region 424719	140 bp proximal
Rr424720	regulatory region 424720	627 bp proximal