rs32772223 SNP Detail

Summary

• ID
  rs32772223
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151419810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTACTCA CCGTCAGCAG
  CAAAAGCTTC CAAGGTCCCT CTCGTCCCAC CACGCAGCTC TGTACAGAAC AGTAGCCCTG
  CCTGGCCCTC AACTGCTGGG ACGGTGCTGC CCCAGCCAGC AGCATTCCTC CCTCAACCGA
  GCCAGGCTGG CGCTGCCTCA AGGGCGCTGA GCTAGCCTCG AGTGCGTTCA CAGAAACCTA
  S
  CACTCACCCA CAAGGGTCGC TTGGTGCCAC CCTCATTTAC AGGTTAGCAC ACGAAGGAAG
  CTCGGGCAGA AAAAACTGAC ATCCAAGGCC AATGGACTGT CACCCAAACG GGATATCCTG
  CTGCAGCAGA AAAGGGGATC TCAGATGCAG TCTATGGAGG CAGTACCTCC CAGTGACCTG
  CAGGGGGCAG GGCAGAGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46726743	NES10996179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32772223					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46726743	NES10996179	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151419810 () rs orientation: forward

Symbol	Name	Function Class
Camta1	calmodulin binding transcription activator 1	within coordinates
Cpgi15370	CpG island 15370	within coordinates
Rr605572	regulatory region 605572	72 bp proximal
Rr605573	regulatory region 605573	173 bp proximal