rs32774401 SNP Detail

Summary

• ID
  rs32774401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC ATGACTACTA AAACCATAAT
  R
  GGTGTTCCAT TTTCATTTTC TGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45192552	mCV23137233	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss49513610	NES12839765	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	G		G	G	A	G		G	A	A	G		A
ss145704592	ENSMUSSNP1398156	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320045530	CHEV_1_151950027	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32774401					SNP	A	A	G	A	A	G	G	A	G	G	A	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513610	NES12839765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978648 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1353 bp proximal
Rr24983	regulatory region 24983	1385 bp proximal
Rr31002	regulatory region 31002	1248 bp distal
Tssr242	transcription start site region 242	92 bp downstream
Tssr9223	transcription start site region 9223	1948 bp downstream
Tssr9224	transcription start site region 9224	1840 bp downstream
Tssr9225	transcription start site region 9225	1715 bp downstream
Tssr9226	transcription start site region 9226	1702 bp downstream
Tssr9227	transcription start site region 9227	1624 bp downstream
Tssr9228	transcription start site region 9228	1584 bp downstream
Tssr9229	transcription start site region 9229	1571 bp downstream
Tssr9230	transcription start site region 9230	784 bp downstream
Tssr9231	transcription start site region 9231	751 bp downstream
Tssr9232	transcription start site region 9232	708 bp downstream
Tssr9233	transcription start site region 9233	252 bp downstream
Tssr9234	transcription start site region 9234	223 bp downstream
Tssr9235	transcription start site region 9235	192 bp downstream
Tssr9236	transcription start site region 9236	167 bp downstream
Tssr9237	transcription start site region 9237	135 bp downstream
Tssr9238	transcription start site region 9238	104 bp downstream
Tssr9239	transcription start site region 9239	70 bp downstream
Tssr9240	transcription start site region 9240	56 bp downstream
Tssr9241	transcription start site region 9241	26 bp downstream
Tssr9242	transcription start site region 9242	10 bp downstream
Tssr9243	transcription start site region 9243	107 bp upstream
Tssr9244	transcription start site region 9244	152 bp upstream
Tssr9245	transcription start site region 9245	172 bp upstream
Tssr9246	transcription start site region 9246	209 bp upstream
Tssr9247	transcription start site region 9247	348 bp upstream
Tssr9248	transcription start site region 9248	768 bp upstream
Tssr9249	transcription start site region 9249	795 bp upstream
Tssr9250	transcription start site region 9250	963 bp upstream
Tssr9251	transcription start site region 9251	1009 bp upstream
Tssr9252	transcription start site region 9252	1064 bp upstream
Tssr9253	transcription start site region 9253	1094 bp upstream
Tssr9254	transcription start site region 9254	1121 bp upstream
Tssr9255	transcription start site region 9255	1140 bp upstream
Tssr9256	transcription start site region 9256	1380 bp upstream
Tssr9257	transcription start site region 9257	1404 bp upstream
Tssr9258	transcription start site region 9258	1427 bp upstream
Tssr9259	transcription start site region 9259	1452 bp upstream
Tssr9260	transcription start site region 9260	1507 bp upstream
Tssr9261	transcription start site region 9261	1562 bp upstream
Tssr9262	transcription start site region 9262	1570 bp upstream
Tssr9263	transcription start site region 9263	1592 bp upstream
Tssr9264	transcription start site region 9264	1637 bp upstream
Tssr9265	transcription start site region 9265	1668 bp upstream
Tssr9266	transcription start site region 9266	1757 bp upstream
Tssr14130	transcription start site region 14130	1635 bp upstream
Tssr14131	transcription start site region 14131	1579 bp upstream