rs32775229 SNP Detail

Summary

• ID
  rs32775229
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140427470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGCGTTTCT AATTGGCCAC ACAGGGTGTT GTCGGGAGGA TAACCGCCCA ACCAGCCACC
  ACCCCCGGAC AAGCTCCGGC GTGCCATTTC CTGAAACCCG GACCTGACGG CACACTTAGG
  CAGAATTCTT TTCTAGTTGG TTCTAATGTT TTATATCAAA GCATCACGGC TTAATCTCTT
  CAATCTTTTC GAATGCCAGG TCTATTAAGA GGCTTTCAGA CGGTGCTTCT AATATCCCTG
  AAACGCACCA GTTGGTGCTC ATTTTCTGAG TTGTTTTACA TAAGTGCTTC CACCCAGGCT
  K
  GTGACTTTGA TCAAATAACT TAGATTTGGT TCTCCAGGAT TCTCCGCCTG CCTTCAAACG
  TTTGGTCCTG TGCACCCTCC CCCCGCCCCC ATCCCGCTTC TTGATGTAAT TAAGAACGAA
  CTGCAAAGAC CCTAGAAACT CTCTCTAGTC AACCAAGGAA GTTGCCAAAA AAGAAACTTT
  CAGTGTTAAC TCGGGCGCTC GAGAGAGAGA GAGAGAAGTA GGAGGATCAG GTTCAATGTC
  AGCCTGGGCT ACACGGTCAG TTTCAGGCCA GCCTGGGCTA CATGAGACGG AAACAAAACC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45691977	mCV23725053	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32775229					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140427470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	180 bp distal
Cpgi15195	CpG island 15195	906 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	within coordinates
Rcc2	regulator of chromosome condensation 2	382 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	276 bp distal
Rr603518	regulatory region 603518	within coordinates
Rr603519	regulatory region 603519	393 bp proximal
Rr603520	regulatory region 603520	1101 bp proximal
Rr603521	regulatory region 603521	1251 bp proximal
Tssr39970	transcription start site region 39970	277 bp downstream
Tssr39971	transcription start site region 39971	204 bp downstream
Tssr39972	transcription start site region 39972	184 bp downstream
Tssr39973	transcription start site region 39973	161 bp downstream
Tssr39974	transcription start site region 39974	176 bp upstream
Tssr39975	transcription start site region 39975	312 bp upstream
Tssr39976	transcription start site region 39976	328 bp upstream
Tssr39977	transcription start site region 39977	443 bp upstream
Tssr39978	transcription start site region 39978	1267 bp upstream
Tssr39979	transcription start site region 39979	1288 bp upstream
Tssr39980	transcription start site region 39980	1307 bp upstream
Tssr39981	transcription start site region 39981	1351 bp upstream
Tssr39982	transcription start site region 39982	1363 bp upstream
Tssr39983	transcription start site region 39983	1449 bp upstream
Tssr39984	transcription start site region 39984	1674 bp upstream
Tssr39985	transcription start site region 39985	1736 bp upstream
Tssr39986	transcription start site region 39986	1777 bp upstream
Tssr39987	transcription start site region 39987	1922 bp upstream
Tssr44270	transcription start site region 44270	509 bp upstream
Tssr44271	transcription start site region 44271	476 bp upstream
Tssr44272	transcription start site region 44272	336 bp upstream
Tssr44273	transcription start site region 44273	910 bp downstream