rs32776997 SNP Detail

Summary

• ID
  rs32776997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181340374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT GCTAACTCAT CTGTTGGAGA
  Y
  GGGCTTTCGC AGATGCCAGC TGCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45194686	mCV25244196	ABI	CRAMUS_MOUSE	f	SNP		T	C				T	C
ss46727827	NES10639753	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T		C	T		T	T	C		C
ss146396671	ENSMUSSNP6912164	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320161711	CHEV_1_183442940	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32776997					SNP	T	T	C	T	T	T	T	C	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46727827	NES10639753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181340374 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	1358 bp upstream
Cpgi1136	CpG island 1136	1945 bp distal
Rr424762	regulatory region 424762	1215 bp distal
Rr424763	regulatory region 424763	1304 bp distal
Rr424764	regulatory region 424764	46 bp distal