rs32777001 SNP Detail

Summary

• ID
  rs32777001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181340579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGCAGAT GCCAGCTGCG
  AAAAAAAGCC CAAATAAACC AAAAGAGCCT CAGCATGACA GTACAATCGA GTTCTCTGGC
  CGCCAGACTC ACACACTGGT GATTAGCTGG AGACAGCTGC AGACAAGGTA GCGCAATAAT
  GATCCAGGAT GGGCGGGGCA AGGTGCAGGA GCGTAGGCTG TCTCCCAGGC CACGAGGGAC
  R
  GTACACAACC ATGGGGCCAC CCAGAGCATC GAGGCAGATG ACTTTAAAAG CCTTCAACTT
  AAGTTTAGAG AGAAAACTAT GGGAAGTCCT TCATGCCGAG GCAATCACAA GGATTAAAAG
  AAAACTGCAA AGTAAATCTA CCCAGACACA GCAAACCTTT TTCTGAAATA AAATAGAGAG
  GTGGGGGTTT ATCTAATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46727833	NES10639757	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32777001					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46727833	NES10639757	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181340579 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	1563 bp upstream
Rr424762	regulatory region 424762	1420 bp distal
Rr424763	regulatory region 424763	1509 bp distal
Rr424764	regulatory region 424764	251 bp distal