rs32777786 SNP Detail

Summary

• ID
  rs32777786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149717776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGAACTGCT ATGCAGCCAC TTTAAGCTGT GCTATAGAAG CATAAGAAGC AGGTACGTAT
  GTATTGCAGA TACAGCAGGA TTCCAGTTTA ATAAGCACAT TGTGGGCTGG AGGTGTGCCA
  GGGACCAGCC TCGGCTTGGA GAGGGGTACT GAGGAAGGGG TGTGTGGGAA CAGAGAAAGA
  AACAACTCTA AGTTAAATCG TGGGTCACAA GCTGACAGCC TGTGTTCCGC TTGAGACAGC
  TTTCCAGGTA GATTTCTGCT TGAGACAGCT CTCTTAGGCA CAGCTTTCTT TACAAGACAG
  Y
  TCTCTGGTGC TAGAAAAAAA AAATGCTAAA AGCTCTCTGG ATAGATCATA GGTTTTACAA
  TCAAAGTCAG AAAAGCTGCC AGAAAAAAAA AAAATCCCTG GATTTTCCAG CTAAGGCAGA
  AATCCTGTTA AGAGAAATTC TAAAAGTAAT TCTCAGGTTT TCTGACCAAA AAATATCAGA
  AAGCCAGAGA AAAAAATCTA AAAACAGTTG TGTTAGCTCT CAAAGCAGTT CTTTCCCTGG
  GTTTGCTCGA TCTCTCCCTG GCCAAAGCCC ATATCAATTC AATCATTTAC TCCAGGTTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45692961	mCV24218888	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32777786					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149717776 () rs orientation: forward

Symbol	Name	Function Class
Clstn1	calsyntenin 1	within coordinates
Gm70063	predicted gene, 70063	within coordinates
Rr103738	regulatory region 103738	within coordinates
Tssr40351	transcription start site region 40351	1372 bp upstream
Tssr40352	transcription start site region 40352	1921 bp upstream