rs32778245 SNP Detail

Summary

• ID
  rs32778245
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181340900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT AATAATTCTT TTTAATGATC
  K
  CAGGTCTTTT TATTTAGAAG ATGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46727839	NES10639759	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	G	T	T		T	T	G		G
ss146396691	ENSMUSSNP910145	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					G
ss320161716	CHEV_1_183443466	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32778245					SNP	T	T	G	T	T	T	T	G	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46727839	NES10639759	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181340900 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	1884 bp upstream
Rr424762	regulatory region 424762	1741 bp distal
Rr424763	regulatory region 424763	1830 bp distal
Rr424764	regulatory region 424764	572 bp distal