rs32778599 SNP Detail

Summary

• ID
  rs32778599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:27748560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGAGGG AAGCTTATCT TCCCTGGAAA GCTACTCAAT
  GGAGCTACCA AGGCAGGGAA ACGGTGCTTA CCCTCAGGCT CAGGTCCCTC CTAGCTGTGG
  Y
  TGTAGGCTTG TGGGCAATCA TCTTTAACTC CTCAACTTAT CCAAGTGCCT TAGGGGTAAT
  AGAACACTGT CTTAGTCAGT GTTCTATTGC TGTGACGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46190714	mCV24519105	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T
ss51947123	NES14964448	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	T	T	C	C		T	C	T	T		T
ss148886520	ENSMUSSNP3867549	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322535789	CHEV_8_28369004	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32778599					SNP	C	C	C	T	C	C	T	T	T	C	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51947123	NES14964448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27748560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20220	CpG island 20220	1406 bp proximal
Eif4ebp1	eukaryotic translation initiation factor 4E binding protein 1	1795 bp upstream
Rr176179	regulatory region 176179	1560 bp distal
Rr186444	regulatory region 186444	840 bp proximal
Tssr76776	transcription start site region 76776	1789 bp upstream
Tssr76777	transcription start site region 76777	1800 bp upstream
Tssr76778	transcription start site region 76778	1863 bp upstream
Tssr76779	transcription start site region 76779	1897 bp upstream
Tssr76780	transcription start site region 76780	1965 bp upstream