rs32778844 SNP Detail

Summary

• ID
  rs32778844
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53338260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTCAT GTCAGAATGT
  GGGTGTTTAG GTTTCCAGCT ATGGCACTGT TGATTTCTTT CTTTCCTGCA GAGCAAACAT
  GAATGTTGGA GTTGCCCACA GTGAGGTAAA CCCCAATACT CGTGTAATGA ACAGCCGTGG
  TATGTGGCTG ACATATGCGT TGGGAGTTGG CCTGCTTCAT ATTGTATTAC TCAGCATCCC
  S
  TTCTGCAGTG TTCCTGTTGC CTGGACCTTA ACCAACATAA TACATAATCT GGTAAGAACT
  CCATCTTCTT TTCAGTATGG AGAGCTCTAA GATTGTCTGT CAGGGAGTTA AGGAGAAGGA
  AGCAGTGAGA CACCATTGAC TGAGTACAGA GCTTCAGTTT GGAAAGATGA GAAAAGTGGA
  GATAAGTTAC TGGTGGTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399241	NES12802327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32778844					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399241	NES12802327	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53338260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	1656 bp distal
Gm28778	predicted gene 28778	within coordinates
Ormdl1	ORM1-like 1 (S. cerevisiae)	within coordinates
Rr410947	regulatory region 410947	1980 bp distal
Rr410948	regulatory region 410948	1222 bp distal
Tssr6688	transcription start site region 6688	1977 bp downstream
Tssr6689	transcription start site region 6689	1945 bp downstream