rs32778846 SNP Detail

Summary

• ID
  rs32778846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53337989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTTTG GCAATCCTCT
  TGAATGCTGG GATTACAGAA CTGAACCAAC ACACCTGGAT CCAGTTTGAG CTTTCTTTCC
  TATTATTCCA TCTAGTTAAA TTGACAGGCT AGAAAACAAG CTTTGGAAAA AGAAGCCATA
  CAAATAAGCT TTGTCTACCT AACAGTAGTG ACAGCCGGCA CTGATAGTTT ATTGCTTGCG
  Y
  TGACCTCTGT AGAAGGCAGA TTTTGGGGGT CTGTGTGTTC AGAGTGAGAA GGGGAGAAAA
  TTGAAGTAAC ATTTTGTCAT GTCAGAATGT GGGTGTTTAG GTTTCCAGCT ATGGCACTGT
  TGATTTCTTT CTTTCCTGCA GAGCAAACAT GAATGTTGGA GTTGCCCACA GTGAGGTAAA
  CCCCAATACT CGTGTAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399243	NES12802326	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32778846					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399243	NES12802326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53337989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	1385 bp distal
Gm28778	predicted gene 28778	within coordinates
Ormdl1	ORM1-like 1 (S. cerevisiae)	within coordinates
Pms1	PMS1 homolog 1, mismatch repair system component	1812 bp upstream
Rr410945	regulatory region 410945	1823 bp distal
Rr410947	regulatory region 410947	1709 bp distal
Rr410948	regulatory region 410948	951 bp distal
Tssr6687	transcription start site region 6687	1736 bp downstream
Tssr6688	transcription start site region 6688	1706 bp downstream
Tssr6689	transcription start site region 6689	1674 bp downstream
Tssr11646	transcription start site region 11646	1833 bp upstream
Tssr11647	transcription start site region 11647	1807 bp upstream