rs32778848 SNP Detail

Summary

• ID
  rs32778848
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53337864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAACTT GAACAATTAT
  ATATTTAGCT CCTGGCTCTC ACTCTGCTTA CATTTTACAT ATATGTAATT TTTTCTTTTT
  TTAAAGAATT TTGAAATAGG GTATTGCTAT TCGGCTAGGC TGACCTCAGA TTTTGGCAAT
  CCTCTTGAAT GCTGGGATTA CAGAACTGAA CCAACACACC TGGATCCAGT TTGAGCTTTC
  W
  TTCCTATTAT TCCATCTAGT TAAATTGACA GGCTAGAAAA CAAGCTTTGG AAAAAGAAGC
  CATACAAATA AGCTTTGTCT ACCTAACAGT AGTGACAGCC GGCACTGATA GTTTATTGCT
  TGCGCTGACC TCTGTAGAAG GCAGATTTTG GGGGTCTGTG TGTTCAGAGT GAGAAGGGGA
  GAAAATTGAA GTAACATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399245	NES12802325	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32778848					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399245	NES12802325	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53337864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	1260 bp distal
Gm28778	predicted gene 28778	within coordinates
Ormdl1	ORM1-like 1 (S. cerevisiae)	within coordinates
Pms1	PMS1 homolog 1, mismatch repair system component	1687 bp upstream
Rr410945	regulatory region 410945	1698 bp distal
Rr410946	regulatory region 410946	1935 bp distal
Rr410947	regulatory region 410947	1584 bp distal
Rr410948	regulatory region 410948	826 bp distal
Tssr6687	transcription start site region 6687	1611 bp downstream
Tssr6688	transcription start site region 6688	1581 bp downstream
Tssr6689	transcription start site region 6689	1549 bp downstream
Tssr11646	transcription start site region 11646	1708 bp upstream
Tssr11647	transcription start site region 11647	1682 bp upstream