rs32778850 SNP Detail

Summary

• ID
  rs32778850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53337486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCAACC TATACAGTGA
  AACCTTGTTT CAAGAGAGAG GGAGATCAAA GCAAAATGCT TTTGACCTCT GACTATGGCT
  AAAATGTTCC ATTACATGTT AGCATCTTGC CACTCAGACT GGTTGAGCCA GTTCTGTCCC
  CCCACCCCCA CACACACACA TCTTTTTAAA ATACTATTTT ATTGGTGATT ATTATATTTG
  R
  CAAAACTAGC TCCACAGAGA AATAAAAGTA GTATGCGGAA AGCTCATAAA AGAAAACAAA
  AAGATGACCT GAAAATACAA AATGGGCTAG ACTGCCACGG GAAGGGGAGT GGAGAGAGCA
  GGAGAGGGGA TACACTAGAA ACATGGTATA GGCATATATT GAAACATCGC AGTGAAACTG
  CTAACTTGAA CAATTATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399247	NES12802352	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32778850					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399247	NES12802352	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53337486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	882 bp distal
Gm28778	predicted gene 28778	within coordinates
Ormdl1	ORM1-like 1 (S. cerevisiae)	within coordinates
Pms1	PMS1 homolog 1, mismatch repair system component	1309 bp upstream
Rr410945	regulatory region 410945	1320 bp distal
Rr410946	regulatory region 410946	1557 bp distal
Rr410947	regulatory region 410947	1206 bp distal
Rr410948	regulatory region 410948	448 bp distal
Tssr6687	transcription start site region 6687	1233 bp downstream
Tssr6688	transcription start site region 6688	1203 bp downstream
Tssr6689	transcription start site region 6689	1171 bp downstream
Tssr11646	transcription start site region 11646	1330 bp upstream
Tssr11647	transcription start site region 11647	1304 bp upstream