rs32779478 SNP Detail

Summary

• ID
  rs32779478
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53336953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCCGA AAGAACATTA
  CACTCCAGAA ACACTTGCGT AGCCGGGTGA AATTCCTTTC TTCAAACACT GCAATAGAAA
  GGATTTTAGG TATCTTTGAA TAGAAGCTGA AATGTATTCT AGCGCATTTC CTTCTCTCAG
  ACAACACCCA TTTCAGTTTG ATTGTAACAA AGTAAACTCT TAGGCCCCCC CAAAACTGTA
  W
  GCTCACGACA ATTGAGTACT AATACTAGAA ATACTAATAC TTAGTGTTTC TTCCTGAACA
  TAAAAGGAGT AAGCGGGTGG GTGGGGGCGC GCGGAGGTAA ATAAATAAAT AAGTAGAGAG
  TTTGGCTAAA GAAATATTGA GAAAGATTCA TGACTTTAAC CTAGTTGTGG TACAAATTTG
  AACCCCTAAC CCTATAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399255	NES12802421	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32779478					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399255	NES12802421	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53336953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	349 bp distal
Gm28778	predicted gene 28778	within coordinates
Ormdl1	ORM1-like 1 (S. cerevisiae)	within coordinates
Pms1	PMS1 homolog 1, mismatch repair system component	776 bp upstream
Rr410945	regulatory region 410945	787 bp distal
Rr410946	regulatory region 410946	1024 bp distal
Rr410947	regulatory region 410947	673 bp distal
Rr410948	regulatory region 410948	within coordinates
Tssr6687	transcription start site region 6687	700 bp downstream
Tssr6688	transcription start site region 6688	670 bp downstream
Tssr6689	transcription start site region 6689	638 bp downstream
Tssr11646	transcription start site region 11646	797 bp upstream
Tssr11647	transcription start site region 11647	771 bp upstream