rs32779947 SNP Detail

Summary

• ID
  rs32779947
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85707211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG GTCCCCATTC CCTACCACTT
  W
  TCTTTGAAGT CTGAATACTC TTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46189970	mCV24067740	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss145398727	ENSMUSSNP3198746	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322752783	CHEV_8_87504481	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32779947					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85707211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	1536 bp distal
Cpgi20739	CpG island 20739	476 bp distal
Junb	jun B proto-oncogene	1834 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr401033	regulatory region 401033	1623 bp downstream
Rr401034	regulatory region 401034	403 bp downstream
Tssr78496	transcription start site region 78496	1977 bp downstream
Tssr78497	transcription start site region 78497	1953 bp downstream
Tssr78498	transcription start site region 78498	1595 bp downstream
Tssr78499	transcription start site region 78499	385 bp downstream
Tssr78500	transcription start site region 78500	333 bp downstream
Tssr78501	transcription start site region 78501	217 bp downstream
Tssr82225	transcription start site region 82225	1858 bp upstream
Tssr82226	transcription start site region 82226	415 bp downstream
Tssr82227	transcription start site region 82227	472 bp downstream