rs32780180 SNP Detail

Summary

• ID
  rs32780180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53336053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCGCTAC ACTCTCTAGC
  AAGACAAAAC TTTCCCACCT TGAACCCCAA GGGTCTGAGC TCCAACTACT GCCGAGCCAG
  CCCAGAGGCT TGAAACGCGT GCGCGCGAGC CCCGCAAATC CGCACCTAGC CCCGGGAGGC
  GCCTTCAGCC TCCCCGAGCA TCACCGGGCA CGCTCGTTCG CGGTGACACT ACCTTCTAGC
  R
  CGCATTCACC ACCCACAGCG GCAAGCACTC AGCAAACCCT GAGTTGCACG GCCTACTTCG
  CTGGACGTCC TTCGGACCGA AGCACGGCTG CGCTCAGCAG GACCCGCGCT CGCGCTCCTC
  TAAGGCCCGC CCACAGCAGG AAGTGGGATT GGCGCGGCTG GCAGCCAATC GGCTGCTCGC
  TAGAGCAGCT TGGCAGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399269	NES12802408	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32780180					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399269	NES12802408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53336053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	within coordinates
Gm28778	predicted gene 28778	217 bp upstream
Ormdl1	ORM1-like 1 (S. cerevisiae)	201 bp upstream
Pms1	PMS1 homolog 1, mismatch repair system component	within coordinates
Rr410945	regulatory region 410945	within coordinates
Rr410946	regulatory region 410946	124 bp distal
Rr410947	regulatory region 410947	114 bp proximal
Rr410948	regulatory region 410948	228 bp proximal
Tssr6687	transcription start site region 6687	176 bp upstream
Tssr6688	transcription start site region 6688	202 bp upstream
Tssr6689	transcription start site region 6689	253 bp upstream
Tssr11646	transcription start site region 11646	64 bp downstream
Tssr11647	transcription start site region 11647	107 bp downstream