rs32780549 SNP Detail

Summary

• ID
  rs32780549
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55421277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCACTC CCACCTCCTT
  CTCATTCTGG TGCCCCTGAG AGCAGTCAAT GTGGCGTGGC GATACCCTAC GCAACCTTCA
  CAGCCTCAGT CACTGGCCAG AAGGGGACTT TCAGGTGCCC AGGCCCAGGG TAGGCATCTT
  TGCGCCGTTG TTGAGTTACA GATGGCTAGC CGTGATTGCG GCACGCTATA CACCGGGACC
  S
  GCAAATGTGC GATTCTGTGG GTTTTCTTGT GGTGTCTTTG TCTCGTTTGG TTTCTAGGAT
  AGTCCTCCTC CTCTTCTGAA GGATTCCTCA AGCTTTGCCT AATGTTTGGC TGTGGGTTTC
  TACATCTGTT TCCATCAGTT GCTGGAGGAA TCCTCTCTTC TTTAGACACC AATCTATGAG
  TACAGCAGAA TATCATTCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49399715	NES12785323	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32780549					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399715	NES12785323	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55421277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	within coordinates
Gm8531	predicted gene 8531	31 bp upstream
Rr16609	regulatory region 16609	924 bp proximal
Rr33932	regulatory region 33932	931 bp proximal