rs32780552 SNP Detail

Summary

• ID
  rs32780552
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55421217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTCCTGG AGGACCACTC CCACCTCCTT
  CTCATTCTGG TGCCCCTGAG AGCAGTCAAT GTGGCGTGGC GATACCCTAC GCAACCTTCA
  CAGCCTCAGT CACTGGCCAG AAGGGGACTT TCAGGTGCCC AGGCCCAGGG TAGGCATCTT
  K
  GCGCCGTTGT TGAGTTACAG ATGGCTAGCC GTGATTGCGG CACGCTATAC ACCGGGACCC
  GCAAATGTGC gattctgtgg gttttcttgt ggtgtctttg tctcgtttgg tttctaggat
  agtcctcctc ctcttctgaa ggattcctca                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49399719	NES12785321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		T	T	T	T		T
ss319728294	CHEV_1_55438902	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32780552					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399719	NES12785321	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55421217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi265	CpG island 265	within coordinates
Gm8531	predicted gene 8531	within coordinates
Rr16609	regulatory region 16609	984 bp proximal
Rr33932	regulatory region 33932	991 bp proximal