rs32781094 SNP Detail

Summary

• ID
  rs32781094
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53335467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGATGT TCCAGCACAC
  AACACATGGA GTGTGGGAAA AGAATTCATA CCTAGTGAGG ACAATCCTAC TGTTGGAACA
  GTCCTAGTGT TAGAAAAGAA GTCATGTTTA CTGAAGCCAA TCAACAGTCC TGGAAGTATG
  CTGTGATCAG AAAGAGAAAC TGATCTACAA AAGCAAAAAG ATTAGAGAGC TTGGATTTTA
  S
  GGAGAAAACA GCAAATTTTA CAACAGAATA AATCCAACCC AACCATCACA CAGAACCAAC
  ACAAATAAAA GATACCTACA CACACACACA CACACACACA CACACACACA CGCACGCAAG
  CATTCTGTCA ACTTTAAAAT GTTTTTCAGA GTTATTTCTG AAATAAAACT CACAAAGTTT
  TATAAATACA AATCACCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399273	NES12802406	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32781094					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399273	NES12802406	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53335467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	312 bp proximal
Gm28778	predicted gene 28778	803 bp upstream
Ormdl1	ORM1-like 1 (S. cerevisiae)	787 bp upstream
Pms1	PMS1 homolog 1, mismatch repair system component	within coordinates
Rr410945	regulatory region 410945	38 bp proximal
Rr410946	regulatory region 410946	441 bp proximal
Rr410947	regulatory region 410947	700 bp proximal
Rr410948	regulatory region 410948	814 bp proximal
Tssr6687	transcription start site region 6687	762 bp upstream
Tssr6688	transcription start site region 6688	788 bp upstream
Tssr6689	transcription start site region 6689	839 bp upstream
Tssr11646	transcription start site region 11646	650 bp downstream
Tssr11647	transcription start site region 11647	693 bp downstream