rs32781101 SNP Detail

Summary

• ID
  rs32781101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:53334949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCTTAG TATTTCTCCT
  CTGAACGACT CCAATAACTA CCAAATTGAT ATATGGATTT AAATATTTGT AAGTTGTTTC
  TATAATTAAA GTATCTTTGC TATCCTACTT TAAATTTTTA AGATTTTTCA ACTGCTAAGT
  ATGTTAAGTC CAAATTCCCT ACTACCCTAT CTCTCTAATT TCATCCCATT TTCCAAATGT
  R
  CACACAGTAC TAATCTGGTC ACACTACAAT GTGGCTCTCT TTACCTAGAT GTGGTAGGAT
  TTCCTGGGCC ACATGACATT TTTCTGGGAT GTCTTGTGTC AGTTCCCAAA ACTCTTTTTC
  CATATTCCAA TCTCCCAAGA GATTAGGCAT CCCTTCGTTT TTTTAATTCA AACTCATAAA
  TGGCTATTTT ATTTATCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49399281	NES12802400	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32781101					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49399281	NES12802400	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:53334949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi250	CpG island 250	830 bp proximal
Gm28778	predicted gene 28778	1321 bp upstream
Ormdl1	ORM1-like 1 (S. cerevisiae)	1305 bp upstream
Pms1	PMS1 homolog 1, mismatch repair system component	within coordinates
Rr410945	regulatory region 410945	556 bp proximal
Rr410946	regulatory region 410946	959 bp proximal
Rr410947	regulatory region 410947	1218 bp proximal
Rr410948	regulatory region 410948	1332 bp proximal
Tssr6687	transcription start site region 6687	1280 bp upstream
Tssr6688	transcription start site region 6688	1306 bp upstream
Tssr6689	transcription start site region 6689	1357 bp upstream
Tssr11646	transcription start site region 11646	1168 bp downstream
Tssr11647	transcription start site region 11647	1211 bp downstream