rs32781198 SNP Detail

Summary

• ID
  rs32781198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCCATC CAAGTACGGC
  TTGGGGAGAC GACTCTATTG TCACAAGGGC CTTGTTCCCT CAGGGGCTCC AGGGTCACCA
  AGTTCTGCCT TCTCCGCTCT AGGCTCTAGA GAGTCACAGA ATCCACATTA AATTTTCCTG
  TCAGCAGCCC AAGGACACCT AGAAAGAGCC CAGCATCACC CAGAGTAGAG CTTCCAGAGC
  R
  AGCATGGATT CAGCGAGCTA CAGCCACTAC TCTCTAAGGA CCTGAGCTCT TGGTGGGTGG
  GATTAGTTCA GAGTCCTGAA TCCCAACATT GCCAGGTACT GGCAGGGCCA CCTGGGGCAA
  GGAACTCCTC CTCTCTGGGA CTCAGCCTTC AGGAAATAGA GCCTTGGGAG TCTGGGTTCA
  TCTTGTGAAA CAGGGCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45693797	mCV22587454	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147471939	ENSMUSSNP4279168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321329087	CHEV_4_131474224	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32781198					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1546 bp distal
Cpgi14947	CpG island 14947	1402 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm68339	predicted gene, 68339	1918 bp downstream
Rr85750	regulatory region 85750	1020 bp distal
Rr85751	regulatory region 85751	420 bp distal
Rr100128	regulatory region 100128	180 bp proximal