rs32782338 SNP Detail

Summary

• ID
  rs32782338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85879279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCTCTC TGGACCACGA
  CCCATCCCTA CGGTTTCGCC TGGGCCACCC CAACCTGGTC AGACCACGTG CCCATGCTGA
  ATCAAGTCTT GTTTCAGCAG CCGGTGAACT TCGGACCTCT AGTCCCTTCC TTCCCTCCCC
  CACAGCGCTG ATTTTCTGCT GGAGAGTTAA TTTGTTGCAA CTGCCCTCCC CGTTGTAAAC
  Y
  GGGAGTGCCC AATGTAGTAT TGGAGAAGGG AATTCTTTTG GATGGAGGTC ATTTGGGGGC
  CTATAGTTAG TTACCTTTAA GATCTTGTTT TGGGACACAC CAACGAAGCA CGAATCAAAT
  AGCTTGGTGC ATAAGTATAA AATTAAATGT AGATCCACCC TCCTTCCCTT TACCTGGGGT
  GGGTTTTCAA TGTAACCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46728626	NES10744713	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32782338					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46728626	NES10744713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85879279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	64 bp distal
Rr579285	regulatory region 579285	853 bp distal
Rr579286	regulatory region 579286	within coordinates
Rr579287	regulatory region 579287	1481 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	797 bp downstream
Tssr29771	transcription start site region 29771	736 bp downstream